RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g30530.1 View Network Show in Genome Browser |
| Other Names | Os05g0368300 |
| Description | 40S ribosomal protein S4, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 17693098-17695785 Nucleotide Length: 792 |
| Protein-coding | LOC_Os05g30530 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g51630 LOC_Os02g14059 LOC_Os05g28750 LOC_Os01g19840 LOC_Os03g10340 LOC_Os05g11710 LOC_Os01g10820 LOC_Os03g59310 LOC_Os03g38000 LOC_Os04g50990 LOC_Os04g28180 More.. |
| Downstream Genes | LOC_Os11g29190 LOC_Os06g35730 LOC_Os08g13690 LOC_Os12g38000 LOC_Os12g21798 LOC_Os07g12250 LOC_Os09g08430 LOC_Os05g49030 LOC_Os05g48310 LOC_Os11g05562 LOC_Os09g31180 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g30530.1 |
| Rice Genome Annotation | LOC_Os05g30530.1 |
| Ricechip | LOC_Os05g30530.1 |
| KEGG | osa:4338571 dosa:Os05t0368300-01 |
| Entrez-Gene | 4338571 |