RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g32270.1 View Network Show in Genome Browser |
| Other Names | Os05g0389000 |
| Description | AP2 domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 18812390-18817699 Nucleotide Length: 945 |
| Protein-coding | LOC_Os05g32270 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g20720 LOC_Os02g57990 LOC_Os03g49610 LOC_Os03g56620 |
| Downstream Genes | LOC_Os09g37910 LOC_Os10g25780 LOC_Os05g47980 LOC_Os07g46540 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g32270.1 |
| Rice Genome Annotation | LOC_Os05g32270.1 |
| Ricechip | LOC_Os05g32270.1 |
| KEGG | osa:4338669 dosa:Os05t0389000-01 |
| Entrez-Gene | 4338669 |