RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g32600.2 View Network Show in Genome Browser |
| Other Names | Os05g0392300 |
| Description | cyclin-dependent kinase D-1, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 19083908-19089902 Nucleotide Length: 840 |
| Protein-coding | LOC_Os05g32600 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g52750 LOC_Os04g42990 LOC_Os03g02680 LOC_Os02g03060 LOC_Os05g05260 LOC_Os02g03340 LOC_Os03g01850 LOC_Os03g19059 LOC_Os03g08280 LOC_Os02g54490 LOC_Os04g47580 More.. |
| Downstream Genes | LOC_Os07g22840 LOC_Os11g28350 LOC_Os08g25060 LOC_Os06g07480 LOC_Os07g43060 LOC_Os12g09280 LOC_Os12g07050 LOC_Os06g07978 LOC_Os06g07878 LOC_Os06g07140 LOC_Os06g06090 More.. |
| Reference | |
|---|---|
| PubMed | 9880343 1376401 11826308 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g32600.2 |
| Rice Genome Annotation | LOC_Os05g32600.2 |
| Ricechip | LOC_Os05g32600.2 |
| KEGG | osa:4338689 dosa:Os05t0392300-01 |
| Entrez-Gene | 4338689 |