RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g32680.1 View Network Show in Genome Browser |
| Other Names | Os05g0393400 |
| Description | PAC, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 19130324-19135942 Nucleotide Length: 975 |
| Protein-coding | LOC_Os05g32680 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g61320 LOC_Os01g71330 LOC_Os02g58120 LOC_Os03g59264 |
| Downstream Genes | LOC_Os10g12354 LOC_Os06g02500 LOC_Os11g41910 LOC_Os11g02450 LOC_Os05g49220 LOC_Os05g49610 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1861n |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g32680.1 |
| Rice Genome Annotation | LOC_Os05g32680.1 |
| Ricechip | LOC_Os05g32680.1 |
| KEGG | osa:4338694 dosa:Os05t0393400-01 |
| Entrez-Gene | 4338694 |