RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g33280.1 View Network Show in Genome Browser |
| Other Names | Os05g0401100 |
| Description | thylakoid lumen protein, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 19507483-19509091 Nucleotide Length: 1086 |
| Protein-coding | LOC_Os05g33280 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0015979 | photosynthesis | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g72950 LOC_Os03g21560 LOC_Os03g03720 LOC_Os02g51470 LOC_Os02g43600 LOC_Os03g55720 LOC_Os04g58200 LOC_Os02g37060 LOC_Os02g49870 LOC_Os03g22270 LOC_Os03g60400 More.. |
| Downstream Genes | LOC_Os09g34140 LOC_Os06g21210 LOC_Os08g02630 LOC_Os07g32880 LOC_Os09g26810 LOC_Os08g44680 LOC_Os07g37030 LOC_Os12g08770 LOC_Os07g28610 LOC_Os05g48630 LOC_Os06g49160 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g33280.1 |
| Rice Genome Annotation | LOC_Os05g33280.1 |
| Ricechip | LOC_Os05g33280.1 |
| KEGG | osa:4338729 dosa:Os05t0401100-01 |
| Entrez-Gene | 4338729 |