RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g33390.1 View Network Show in Genome Browser |
| Other Names | Os05g0402800 |
| Description | cation-transporting ATPase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 19609472-19624705 Nucleotide Length: 3612 |
| Protein-coding | LOC_Os05g33390 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0007154 | cell communication | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0019725 | cellular homeostasis | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009856 | pollination | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g10290 LOC_Os03g17310 LOC_Os01g55040 LOC_Os02g07630 LOC_Os02g14000 LOC_Os04g47590 LOC_Os02g56110 LOC_Os04g14680 LOC_Os03g03610 LOC_Os03g15350 LOC_Os04g46940 More.. |
| Downstream Genes | LOC_Os07g12900 LOC_Os06g08380 LOC_Os11g42160 LOC_Os06g07090 LOC_Os06g47550 LOC_Os06g51270 LOC_Os08g29150 LOC_Os07g09510 LOC_Os06g51250 LOC_Os11g43640 LOC_Os08g28190 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g33390.1 |
| Rice Genome Annotation | LOC_Os05g33390.1 |
| Ricechip | LOC_Os05g33390.1 |
| KEGG | osa:4338738 dosa:Os05t0402800-01 |
| Entrez-Gene | 4338738 |