RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g33870.1 View Network Show in Genome Browser |
| Other Names | Os05g0409200 |
| Description | ran GTPase activating protein, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 19981507-19982457 Nucleotide Length: 684 |
| Protein-coding | LOC_Os05g33870 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0030234 | enzyme regulator activity | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005635 | nuclear envelope | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g03130 LOC_Os03g15700 LOC_Os05g28290 LOC_Os02g12570 |
| Downstream Genes | LOC_Os10g39120 LOC_Os12g38380 LOC_Os11g16540 LOC_Os06g48310 LOC_Os08g33390 LOC_Os06g21470 LOC_Os05g49890 LOC_Os11g41890 LOC_Os09g07500 LOC_Os06g13999 LOC_Os06g13839 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g33870.1 |
| Rice Genome Annotation | LOC_Os05g33870.1 |
| Ricechip | LOC_Os05g33870.1 |
| KEGG | dosa:Os05t0409200-00 |