RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g34460.1 View Network Show in Genome Browser |
| Other Names | Os05g0417100 |
| Description | OsDegp7 - Putative Deg protease homologue, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 20433366-20437932 Nucleotide Length: 1845 |
| Protein-coding | LOC_Os05g34460 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g55640 LOC_Os02g16709 LOC_Os04g43050 LOC_Os03g02970 LOC_Os05g18850 LOC_Os01g68120 LOC_Os01g37050 LOC_Os03g38740 LOC_Os01g11990 LOC_Os03g52700 LOC_Os02g04170 More.. |
| Downstream Genes | LOC_Os08g31470 LOC_Os05g41810 LOC_Os09g28000 LOC_Os08g10649 LOC_Os06g05250 LOC_Os06g25250 LOC_Os09g14610 LOC_Os10g34430 LOC_Os11g40500 LOC_Os05g49220 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR171b osa-miR171c-3p osa-miR171d-3p osa-miR171e-3p osa-miR171f-3p osa-miR166i-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g34460.1 |
| Rice Genome Annotation | LOC_Os05g34460.1 |
| Ricechip | LOC_Os05g34460.1 |
| KEGG | osa:4338806 dosa:Os05t0417100-01 |
| Entrez-Gene | 4338806 |