RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g34640.1 View Network Show in Genome Browser |
| Other Names | Os05g0419100 |
| Description | PHD finger protein, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 20542370-20547114 Nucleotide Length: 777 |
| Protein-coding | LOC_Os05g34640 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g56241 LOC_Os02g10320 LOC_Os03g08440 LOC_Os02g50770 LOC_Os04g39100 |
| Downstream Genes | LOC_Os12g18880 LOC_Os12g32380 LOC_Os11g41610 LOC_Os06g13050 LOC_Os09g32976 LOC_Os08g23710 LOC_Os07g46750 LOC_Os09g32964 LOC_Os09g32274 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2925 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g34640.1 |
| Rice Genome Annotation | LOC_Os05g34640.1 |
| Ricechip | LOC_Os05g34640.1 |
| KEGG | osa:4338816 dosa:Os05t0419100-01 |
| Entrez-Gene | 4338816 |