RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g34940.2 View Network Show in Genome Browser |
| Other Names | Os05g0423400 |
| Description | OsMADS4 - MADS-box family gene with MIKCc type-box, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 20759446-20760856 Nucleotide Length: 633 |
| Protein-coding | LOC_Os05g34940 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g15290 LOC_Os03g44200 LOC_Os01g55040 |
| Downstream Genes | LOC_Os07g01820 LOC_Os11g40100 LOC_Os12g31350 LOC_Os11g14900 LOC_Os11g10100 LOC_Os06g08380 LOC_Os06g27890 |
| Reference | |
|---|---|
| PubMed | 17640358 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g34940.2 |
| Rice Genome Annotation | LOC_Os05g34940.2 |
| Ricechip | LOC_Os05g34940.2 |
| KEGG | osa:4338842 dosa:Os05t0423400-01 |
| Entrez-Gene | 4338842 |