RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g35330.1 View Network Show in Genome Browser |
| Other Names | Os05g0427800 |
| Description | ribulose bisphosphate carboxylase large chain precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 20973884-20974330 Nucleotide Length: 447 |
| Protein-coding | LOC_Os05g35330 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g05830 LOC_Os03g59320 LOC_Os02g16660 |
| Downstream Genes | LOC_Os12g19470 LOC_Os12g19381 LOC_Os12g17600 LOC_Os11g32770 LOC_Os07g38230 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00710 rn01100 rn01120 rn00630 |
| Metacyc Pathways | CALVIN-PWY PWY-5532 PWY-5723 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g35330.1 |
| Rice Genome Annotation | LOC_Os05g35330.1 |
| Ricechip | LOC_Os05g35330.1 |
| KEGG | osa:4338862 dosa:Os05t0427800-00 |
| Entrez-Gene | 4338862 |