RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g35580.1 View Network Show in Genome Browser |
| Other Names | Os05g0430800 |
| Description | amidophosphoribosyltransferase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 21141376-21143534 Nucleotide Length: 1626 |
| Protein-coding | LOC_Os05g35580 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g42520 LOC_Os05g08950 LOC_Os01g72240 LOC_Os01g48960 LOC_Os05g18790 LOC_Os02g40010 LOC_Os02g03540 LOC_Os02g48390 LOC_Os01g72250 LOC_Os01g66500 LOC_Os04g53210 More.. |
| Downstream Genes | LOC_Os07g30150 LOC_Os12g39860 LOC_Os08g09210 LOC_Os06g15420 LOC_Os08g39160 LOC_Os12g09540 LOC_Os05g38170 LOC_Os07g46460 LOC_Os09g29190 LOC_Os06g22560 LOC_Os11g16370 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5518 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00230 rn00250 rn01100 rn01110 |
| Metacyc Pathways | DENOVOPURINE2-PWY PWY-841 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g35580.1 |
| Rice Genome Annotation | LOC_Os05g35580.1 |
| Ricechip | LOC_Os05g35580.1 |
| KEGG | osa:4338879 dosa:Os05t0430800-01 |
| Entrez-Gene | 4338879 |