RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g37980.1 View Network Show in Genome Browser |
| Other Names | Os05g0453900 |
| Description | PSF1 - Putative GINS complex subunit, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 22281714-22284003 Nucleotide Length: 594 |
| Protein-coding | LOC_Os05g37980 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g05150 LOC_Os01g14610 LOC_Os05g06840 LOC_Os04g51920 LOC_Os03g29240 LOC_Os03g29190 LOC_Os03g15770 LOC_Os03g55200 LOC_Os02g03060 LOC_Os03g27970 LOC_Os02g19860 More.. |
| Downstream Genes | LOC_Os08g17294 LOC_Os09g06560 LOC_Os10g35560 LOC_Os10g34040 LOC_Os09g25960 LOC_Os08g03390 LOC_Os09g02284 LOC_Os06g07210 LOC_Os06g35540 LOC_Os11g14220 LOC_Os07g01870 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g37980.1 |
| Rice Genome Annotation | LOC_Os05g37980.1 |
| Ricechip | LOC_Os05g37980.1 |
| KEGG | dosa:Os05t0453900-00 |