RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g38120.1 View Network Show in Genome Browser |
| Other Names | Os05g0455200 |
| Description | homeodomain protein, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 22353997-22358568 Nucleotide Length: 1743 |
| Protein-coding | LOC_Os05g38120 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g52840 LOC_Os03g47740 LOC_Os03g12860 LOC_Os03g06930 LOC_Os03g52239 LOC_Os03g03260 LOC_Os05g02820 LOC_Os04g46350 LOC_Os02g49700 LOC_Os02g05640 LOC_Os03g47730 More.. |
| Downstream Genes | LOC_Os12g43950 LOC_Os11g06020 LOC_Os06g01934 LOC_Os10g39030 LOC_Os08g32080 LOC_Os06g04870 LOC_Os06g04850 LOC_Os10g01470 LOC_Os08g36220 LOC_Os09g27450 LOC_Os10g41230 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g38120.1 |
| Rice Genome Annotation | LOC_Os05g38120.1 |
| Ricechip | LOC_Os05g38120.1 |
| KEGG | osa:4338977 dosa:Os05t0455200-01 |
| Entrez-Gene | 4338977 |