RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g38170.1 View Network Show in Genome Browser |
| Other Names | Os05g0455700 |
| Description | phosphoribosyl transferase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 22387948-22392458 Nucleotide Length: 906 |
| Protein-coding | LOC_Os05g38170 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0007154 | cell communication | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g48390 LOC_Os05g08950 LOC_Os04g42520 LOC_Os05g35580 LOC_Os02g03540 LOC_Os01g72240 LOC_Os01g65260 LOC_Os01g54100 LOC_Os01g63870 LOC_Os03g61600 LOC_Os01g39270 More.. |
| Downstream Genes | LOC_Os07g30150 LOC_Os12g39860 LOC_Os08g41990 LOC_Os09g39180 LOC_Os11g02450 LOC_Os12g02380 LOC_Os06g20320 LOC_Os06g46930 LOC_Os07g46630 LOC_Os06g40910 LOC_Os12g23630 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00230 rn01100 rn00240 |
| Metacyc Pathways | P1-PWY SALVADEHYPOX-PWY PWY-5043 P121-PWY PWY-6605 PWY-6610 PWY0-163 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g38170.1 |
| Rice Genome Annotation | LOC_Os05g38170.1 |
| Ricechip | LOC_Os05g38170.1 |
| KEGG | osa:4338981 dosa:Os05t0455700-01 |
| Entrez-Gene | 4338981 |