RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g38420.1 View Network Show in Genome Browser |
| Other Names | Os05g0458600 |
| Description | laccase precursor protein, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 22533536-22536101 Nucleotide Length: 1725 |
| Protein-coding | LOC_Os05g38420 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0019748 | secondary metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g38410 LOC_Os01g15830 LOC_Os04g31410 LOC_Os01g33160 LOC_Os04g42620 LOC_Os01g11710 LOC_Os01g71474 LOC_Os02g58720 LOC_Os04g40730 LOC_Os02g20540 LOC_Os03g12030 More.. |
| Downstream Genes | LOC_Os07g40900 LOC_Os11g02350 LOC_Os10g06000 LOC_Os10g05990 LOC_Os10g05980 LOC_Os11g30560 LOC_Os06g06250 LOC_Os09g25850 LOC_Os06g05550 LOC_Os12g34524 LOC_Os10g05970 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR397a osa-miR397b |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g38420.1 |
| Rice Genome Annotation | LOC_Os05g38420.1 |
| Ricechip | LOC_Os05g38420.1 |
| KEGG | osa:4339004 dosa:Os05t0458600-01 |
| Entrez-Gene | 4339004 |