RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g38550.1 View Network Show in Genome Browser |
| Other Names | Os05g0460200 |
| Description | ubiquitin-conjugating enzyme, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 22615843-22620324 Nucleotide Length: 633 |
| Protein-coding | LOC_Os05g38550 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g15350 LOC_Os03g11440 LOC_Os02g06640 LOC_Os01g60410 LOC_Os01g60360 LOC_Os05g06770 LOC_Os02g51430 LOC_Os03g13170 LOC_Os01g22490 LOC_Os04g53620 LOC_Os04g57220 More.. |
| Downstream Genes | LOC_Os06g09330 LOC_Os06g19680 LOC_Os06g47320 LOC_Os09g17840 LOC_Os09g17830 LOC_Os06g46770 LOC_Os05g42424 LOC_Os10g31000 LOC_Os09g39500 LOC_Os10g35470 LOC_Os06g30970 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g38550.1 |
| Rice Genome Annotation | LOC_Os05g38550.1 |
| Ricechip | LOC_Os05g38550.1 |
| KEGG | osa:4339013 dosa:Os05t0460200-01 |
| Entrez-Gene | 4339013 |