RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g38570.1 View Network Show in Genome Browser |
| Other Names | Os05g0460600 |
| Description | riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 22625126-22629028 Nucleotide Length: 1611 |
| Protein-coding | LOC_Os05g38570 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g42000 LOC_Os04g09810 LOC_Os03g02600 LOC_Os02g27340 LOC_Os03g45400 LOC_Os03g52840 LOC_Os02g16630 LOC_Os05g06350 LOC_Os01g27750 LOC_Os01g14950 LOC_Os03g59620 More.. |
| Downstream Genes | LOC_Os12g35580 LOC_Os12g34874 LOC_Os06g39344 LOC_Os11g26860 LOC_Os12g04440 LOC_Os05g42190 LOC_Os11g04670 LOC_Os12g22030 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00740 rn01100 |
| Metacyc Pathways | RIBOSYN2-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g38570.1 |
| Rice Genome Annotation | LOC_Os05g38570.1 |
| Ricechip | LOC_Os05g38570.1 |
| KEGG | osa:4339017 dosa:Os05t0460600-01 |
| Entrez-Gene | 4339017 |