RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g38640.1 View Network Show in Genome Browser |
| Other Names | Os05g0461400 |
| Description | Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 22656825-22658034 Nucleotide Length: 492 |
| Protein-coding | LOC_Os05g38640 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g36280 LOC_Os04g34240 LOC_Os03g27310 LOC_Os01g64640 LOC_Os04g49420 LOC_Os03g02780 LOC_Os02g45940 LOC_Os01g61920 LOC_Os01g05970 LOC_Os01g05630 LOC_Os01g05610 More.. |
| Downstream Genes | LOC_Os11g05730 LOC_Os06g06510 LOC_Os06g06460 LOC_Os06g04030 LOC_Os05g41080 LOC_Os10g39410 LOC_Os09g38020 LOC_Os09g26340 LOC_Os07g36500 LOC_Os05g39050 LOC_Os05g38740 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g38640.1 |
| Rice Genome Annotation | LOC_Os05g38640.1 |
| Ricechip | LOC_Os05g38640.1 |
| KEGG | osa:4339022 dosa:Os05t0461400-02 |
| Entrez-Gene | 4339022 |