RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g39390.1 View Network Show in Genome Browser |
| Other Names | Os05g0470800 |
| Description | outer membrane protein, OMP85 family protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 23104197-23109898 Nucleotide Length: 1563 |
| Protein-coding | LOC_Os05g39390 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g16440 LOC_Os02g10260 LOC_Os05g36000 LOC_Os01g16910 LOC_Os03g38230 LOC_Os02g05640 LOC_Os05g22970 LOC_Os01g73450 LOC_Os03g20750 LOC_Os01g63830 LOC_Os04g33300 More.. |
| Downstream Genes | LOC_Os05g43470 LOC_Os08g12840 LOC_Os06g48290 LOC_Os10g30090 LOC_Os12g42850 LOC_Os10g34540 LOC_Os06g07120 LOC_Os07g41680 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR815a osa-miR815b osa-miR815c |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g39390.1 |
| Rice Genome Annotation | LOC_Os05g39390.1 |
| Ricechip | LOC_Os05g39390.1 |
| KEGG | osa:4339073 dosa:Os05t0470800-01 |
| Entrez-Gene | 4339073 |