RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g39540.1 View Network Show in Genome Browser |
| Other Names | Os05g0472400 |
| Description | metal cation transporter, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 23204531-23209876 Nucleotide Length: 1089 |
| Protein-coding | LOC_Os05g39540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g37820 LOC_Os04g27060 LOC_Os04g26910 LOC_Os04g26870 LOC_Os04g53240 LOC_Os01g04660 LOC_Os01g43090 LOC_Os04g26920 LOC_Os01g63290 |
| Downstream Genes | LOC_Os08g36420 LOC_Os07g32800 LOC_Os05g47660 LOC_Os08g09240 LOC_Os10g28320 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR812o-5p osa-miR5788 osa-miR1439 osa-miR818a osa-miR818b osa-miR818c osa-miR818d osa-miR818e osa-miR5799 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g39540.1 |
| Rice Genome Annotation | LOC_Os05g39540.1 |
| Ricechip | LOC_Os05g39540.1 |
| KEGG | osa:4339080 dosa:Os05t0472400-00 |
| Entrez-Gene | 4339080 |