RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g39560.1 View Network Show in Genome Browser |
| Other Names | Os05g0472700 |
| Description | metal cation transporter, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 23216413-23219283 Nucleotide Length: 1062 |
| Protein-coding | LOC_Os05g39560 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g37820 LOC_Os04g27060 LOC_Os04g26910 LOC_Os05g30800 LOC_Os04g26870 LOC_Os01g16190 LOC_Os02g41890 LOC_Os04g53240 LOC_Os01g04660 LOC_Os01g58730 LOC_Os01g40860 More.. |
| Downstream Genes | LOC_Os08g36420 LOC_Os07g42960 LOC_Os05g51130 LOC_Os06g40500 LOC_Os07g32800 LOC_Os09g04339 LOC_Os05g47660 LOC_Os08g09240 LOC_Os10g28320 |
| Reference | |
|---|---|
| PubMed | 16263903 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g39560.1 |
| Rice Genome Annotation | LOC_Os05g39560.1 |
| Ricechip | LOC_Os05g39560.1 |
| KEGG | osa:4339082 dosa:Os05t0472700-01 |
| Entrez-Gene | 4339082 |