RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g39760.1 View Network Show in Genome Browser |
| Other Names | Os05g0475475,Os05g0475300 |
| Description | VHS and GAT domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 23351716-23356534 Nucleotide Length: 1878 |
| Protein-coding | LOC_Os05g39760 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g27320 LOC_Os01g12880 LOC_Os02g56110 LOC_Os03g23950 LOC_Os02g17350 LOC_Os03g11720 LOC_Os01g59790 LOC_Os04g51120 LOC_Os03g59740 LOC_Os01g16030 LOC_Os01g61030 More.. |
| Downstream Genes | LOC_Os06g07090 LOC_Os07g03160 LOC_Os12g01390 LOC_Os11g01380 LOC_Os06g22650 LOC_Os05g41060 LOC_Os07g12200 LOC_Os07g12170 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g39760.1 |
| Rice Genome Annotation | LOC_Os05g39760.1 |
| Ricechip | LOC_Os05g39760.1 |
| KEGG | osa:4339094 dosa:Os05t0475475-00dosa:Os05t0475300-01 |