RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g39770.1 View Network Show in Genome Browser |
| Other Names | Os05g0475400 |
| Description | aminotransferase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 23355342-23360051 Nucleotide Length: 1443 |
| Protein-coding | LOC_Os05g39770 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0007154 | cell communication | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g54790 LOC_Os02g50350 LOC_Os02g47590 LOC_Os02g44000 LOC_Os05g35730 LOC_Os04g46460 LOC_Os05g34240 LOC_Os03g42110 LOC_Os02g27760 LOC_Os03g49580 |
| Downstream Genes | LOC_Os08g14770 LOC_Os10g36760 LOC_Os10g25950 LOC_Os10g26010 LOC_Os06g46372 LOC_Os11g20790 LOC_Os10g37690 LOC_Os10g25930 LOC_Os11g11050 LOC_Os07g15880 LOC_Os10g36780 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00250 rn00410 rn00650 rn01100 rn00640 rn00260 rn00630 rn01110 rn00780 rn00860 |
| Metacyc Pathways | GLUDEG-I-PWY PWY-6535 PWY-6537 PWY-6536 PWY-5022 BETA-ALA-DEGRADATION-I-PWY PWY-4321 PWY-3701 BIOTIN-SYNTHESIS-PWY PWY-5188 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g39770.1 |
| Rice Genome Annotation | LOC_Os05g39770.1 |
| Ricechip | LOC_Os05g39770.1 |
| KEGG | osa:4339095 dosa:Os05t0475400-01 |
| Entrez-Gene | 4339095 |