RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g39950.1 View Network Show in Genome Browser |
| Other Names | Os05g0477200 |
| Description | DUF623 domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 23477065-23478850 Nucleotide Length: 1419 |
| Protein-coding | LOC_Os05g39950 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016049 | cell growth | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005856 | cytoskeleton | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g35360 LOC_Os03g53280 LOC_Os04g58820 LOC_Os03g06350 LOC_Os02g17940 LOC_Os05g05210 LOC_Os03g06200 LOC_Os01g40860 LOC_Os01g09850 LOC_Os03g04140 LOC_Os01g74200 More.. |
| Downstream Genes | LOC_Os06g08032 LOC_Os06g07932 LOC_Os12g01390 LOC_Os11g01380 LOC_Os11g37920 LOC_Os07g08430 LOC_Os06g42120 LOC_Os08g04180 LOC_Os09g17840 LOC_Os09g17830 LOC_Os08g44340 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g39950.1 |
| Rice Genome Annotation | LOC_Os05g39950.1 |
| Ricechip | LOC_Os05g39950.1 |
| KEGG | osa:4339103 dosa:Os05t0477200-01 |
| Entrez-Gene | 4339103 |