RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g40060.1 View Network Show in Genome Browser |
| Other Names | Os05g0478400 |
| Description | WRKY48, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 23529423-23530499 Nucleotide Length: 996 |
| Protein-coding | LOC_Os05g40060 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g01180 LOC_Os01g40860 LOC_Os01g38510 LOC_Os02g08180 LOC_Os01g58730 LOC_Os01g68324 LOC_Os02g44510 LOC_Os02g48110 LOC_Os03g61560 |
| Downstream Genes | LOC_Os07g08430 LOC_Os11g37920 LOC_Os09g19734 LOC_Os08g17680 LOC_Os06g06180 LOC_Os07g42960 LOC_Os09g27830 LOC_Os12g23190 LOC_Os10g40740 |
| Reference | |
|---|---|
| PubMed | 15618416 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g40060.1 |
| Rice Genome Annotation | LOC_Os05g40060.1 |
| Ricechip | LOC_Os05g40060.1 |
| KEGG | dosa:Os05t0478400-00 |