RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g40190.1 View Network Show in Genome Browser |
| Other Names | Os05g0480200 |
| Description | thioredoxin, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 23600528-23605114 Nucleotide Length: 408 |
| Protein-coding | LOC_Os05g40190 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0007154 | cell communication | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g10340 LOC_Os04g51920 LOC_Os02g34940 LOC_Os04g35600 LOC_Os03g29240 LOC_Os01g58194 LOC_Os03g29190 LOC_Os03g58630 LOC_Os01g25370 |
| Downstream Genes | LOC_Os11g09280 LOC_Os09g27830 LOC_Os05g47930 LOC_Os08g02340 LOC_Os07g08840 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g40190.1 |
| Rice Genome Annotation | LOC_Os05g40190.1 |
| Ricechip | LOC_Os05g40190.1 |
| KEGG | osa:4339117 dosa:Os05t0480200-01 |
| Entrez-Gene | 4339117 |