RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os05g40420.1 View Network Show in Genome Browser
Other Names	Os05g0482700
Description	2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed
Gene Attributes	Chromosome: Chr5 CDS Coordinates (5'-3'): 23748677-23753405 Nucleotide Length: 1680
Protein-coding	LOC_Os05g40420

Gene Ontology Classification
GO	Name	Type	Code
GO:0008150	biological_process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0003824	catalytic activity	Molecular Function	IEA
GO:0005575	cellular_component	Cellular Component	IEA
GO:0005829	cytosol	Cellular Component	IEA
GO:0005576	extracellular region	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os04g58090 LOC_Os02g56850 LOC_Os04g40850 LOC_Os02g57060 LOC_Os04g37600 LOC_Os01g71230 LOC_Os05g23620 LOC_Os01g47450 LOC_Os02g52700 LOC_Os02g57540 LOC_Os05g30530 More..
Downstream Genes	LOC_Os09g24690 LOC_Os12g35040 LOC_Os07g02210 LOC_Os07g38970 LOC_Os06g21380 LOC_Os08g06040 LOC_Os05g48320 LOC_Os06g45710 LOC_Os08g23810 LOC_Os05g48310 LOC_Os07g08330 More..

miRNA Regulations
miRNAs	osa-miR2867-5p

Pathways
KEGG Pathways	rn00010 rn00260 rn00680 rn01100 rn01110 rn01120
Metacyc Pathways	P124-PWY ANAEROFRUCAT-PWY GLUCONEO-PWY PWY-1042 PWY-3801 GLYCOLYSIS PWY-2221 PWY-1622 PWY-6142 PWY-5484 ANAGLYCOLYSIS-PWY P341-PWY P122-PWY PWY-5723

Database Links
Gramene	LOC_Os05g40420.1
Rice Genome Annotation	LOC_Os05g40420.1
Ricechip	LOC_Os05g40420.1
KEGG	osa:4339133 dosa:Os05t0482700-01
Entrez-Gene	4339133