RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g40420.3 View Network Show in Genome Browser |
| Other Names | Os05g0482700 |
| Description | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 23748756-23751874 Nucleotide Length: 1077 |
| Protein-coding | LOC_Os05g40420 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g58090 LOC_Os02g56850 LOC_Os04g40850 LOC_Os02g57060 LOC_Os04g37600 LOC_Os01g71230 LOC_Os05g23620 LOC_Os01g47450 LOC_Os02g52700 LOC_Os02g57540 LOC_Os05g30530 More.. |
| Downstream Genes | LOC_Os09g24690 LOC_Os12g35040 LOC_Os07g02210 LOC_Os07g38970 LOC_Os06g21380 LOC_Os08g06040 LOC_Os05g48320 LOC_Os06g45710 LOC_Os08g23810 LOC_Os05g48310 LOC_Os07g08330 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2867-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g40420.3 |
| Rice Genome Annotation | LOC_Os05g40420.3 |
| Ricechip | LOC_Os05g40420.3 |
| KEGG | osa:4339133 dosa:Os05t0482700-01 |
| Entrez-Gene | 4339133 |