RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g40790.1 View Network Show in Genome Browser |
| Other Names | Os05g0486300 |
| Description | CCR4-NOT transcription factor, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 23916372-23923564 Nucleotide Length: 2460 |
| Protein-coding | LOC_Os05g40790 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g44900 LOC_Os03g07080 LOC_Os02g02750 LOC_Os03g20370 LOC_Os01g16240 LOC_Os01g17190 LOC_Os02g55300 LOC_Os05g05470 LOC_Os03g05730 LOC_Os04g52340 LOC_Os03g08440 More.. |
| Downstream Genes | LOC_Os10g40780 LOC_Os07g48780 LOC_Os05g41210 LOC_Os12g01190 LOC_Os10g27230 LOC_Os06g10280 LOC_Os05g51640 LOC_Os07g37790 LOC_Os12g39070 LOC_Os10g30580 LOC_Os10g42950 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g40790.1 |
| Rice Genome Annotation | LOC_Os05g40790.1 |
| Ricechip | LOC_Os05g40790.1 |
| KEGG | osa:4339144 dosa:Os05t0486300-01 |
| Entrez-Gene | 4339144 |