RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g41000.1 View Network Show in Genome Browser |
| Other Names | Os05g0489000 |
| Description | endonuclease/exonuclease/phosphatase family domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 24033610-24039071 Nucleotide Length: 1659 |
| Protein-coding | LOC_Os05g41000 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g07080 LOC_Os01g48680 LOC_Os01g58680 LOC_Os02g34884 LOC_Os01g42490 LOC_Os04g33390 |
| Downstream Genes | LOC_Os06g15410 LOC_Os12g22620 LOC_Os12g18200 LOC_Os10g27230 LOC_Os09g36530 LOC_Os10g26164 LOC_Os11g20384 LOC_Os10g35560 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1863c |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g41000.1 |
| Rice Genome Annotation | LOC_Os05g41000.1 |
| Ricechip | LOC_Os05g41000.1 |
| KEGG | osa:4339154 dosa:Os05t0489000-01 |
| Entrez-Gene | 4339154 |