RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g41010.1 View Network Show in Genome Browser |
| Other Names | Os05g0489100 |
| Description | oxidoreductase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 24040970-24043906 Nucleotide Length: 960 |
| Protein-coding | LOC_Os05g41010 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g31770 LOC_Os02g01010 LOC_Os03g13550 LOC_Os03g02730 LOC_Os03g58890 LOC_Os03g07000 LOC_Os02g58070 LOC_Os03g53800 LOC_Os03g58880 LOC_Os02g34940 LOC_Os04g35600 More.. |
| Downstream Genes | LOC_Os11g09280 LOC_Os10g27340 LOC_Os10g35470 LOC_Os07g09630 LOC_Os05g44360 LOC_Os06g39260 LOC_Os10g31420 LOC_Os10g28410 LOC_Os06g04660 LOC_Os11g37920 LOC_Os06g10870 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR393a osa-miR393b-5p osa-miR2091-5p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00330 rn01100 |
| Reference | |
|---|---|
| PubMed | 20336383 22253868 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g41010.1 |
| Rice Genome Annotation | LOC_Os05g41010.1 |
| Ricechip | LOC_Os05g41010.1 |
| KEGG | osa:4339155 dosa:Os05t0489100-01 |
| Entrez-Gene | 4339155 |