RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g41120.1 View Network Show in Genome Browser |
| Other Names | Os05g0490200 |
| Description | endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 24081100-24087010 Nucleotide Length: 1155 |
| Protein-coding | LOC_Os05g41120 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g23620 LOC_Os02g17700 LOC_Os02g05680 LOC_Os03g06740 LOC_Os02g56850 LOC_Os01g48960 LOC_Os02g48290 LOC_Os05g13330 LOC_Os01g55040 LOC_Os03g11720 LOC_Os03g56820 More.. |
| Downstream Genes | LOC_Os12g37360 LOC_Os06g22140 LOC_Os10g37210 LOC_Os06g12090 LOC_Os06g08380 LOC_Os11g05970 LOC_Os10g38030 LOC_Os12g43363 LOC_Os10g28000 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g41120.1 |
| Rice Genome Annotation | LOC_Os05g41120.1 |
| Ricechip | LOC_Os05g41120.1 |
| KEGG | osa:4339163 dosa:Os05t0490200-01 |
| Entrez-Gene | 4339163 |