RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g41450.1 View Network Show in Genome Browser |
| Other Names | Os05g0494100 |
| Description | histone-like transcription factor and archaeal histone, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 24275818-24280710 Nucleotide Length: 873 |
| Protein-coding | LOC_Os05g41450 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g45410 LOC_Os01g70890 LOC_Os02g49370 LOC_Os03g29970 LOC_Os03g29470 LOC_Os05g38820 LOC_Os01g61810 LOC_Os03g51200 LOC_Os05g41060 LOC_Os01g59790 LOC_Os02g49610 More.. |
| Downstream Genes | LOC_Os08g29500 LOC_Os09g39490 LOC_Os07g41580 LOC_Os12g39070 LOC_Os07g22950 LOC_Os12g25120 LOC_Os08g33100 LOC_Os07g36130 LOC_Os08g07740 LOC_Os07g36140 LOC_Os09g30310 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2118d osa-miR2118p |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g41450.1 |
| Rice Genome Annotation | LOC_Os05g41450.1 |
| Ricechip | LOC_Os05g41450.1 |
| KEGG | osa:4339189 dosa:Os05t0494100-01 |
| Entrez-Gene | 4339189 |