RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os05g41510.1 View Network Show in Genome Browser
Other Names	Os05g0494900,Os05g0494800
Description	SH2 motif, putative, expressed
Gene Attributes	Chromosome: Chr5 CDS Coordinates (5'-3'): 24301347-24311126 Nucleotide Length: 4914
Protein-coding	LOC_Os05g41510

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0016043	cellular component organization	Biological Process	IEA
GO:0016043	cellular component organization	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0016787	hydrolase activity	Molecular Function	IEA
GO:0016787	hydrolase activity	Molecular Function	IEA
GO:0003723	RNA binding	Molecular Function	IEA
GO:0003723	RNA binding	Molecular Function	IEA
GO:0005575	cellular_component	Cellular Component	IEA
GO:0005575	cellular_component	Cellular Component	IEA
GO:0005829	cytosol	Cellular Component	IEA
GO:0005829	cytosol	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os02g53230 LOC_Os01g55900 LOC_Os02g49190 LOC_Os05g05230 LOC_Os01g05420 LOC_Os04g25550 LOC_Os02g19860 LOC_Os03g18510 LOC_Os05g33240 LOC_Os04g43922 LOC_Os02g02390 More..
Downstream Genes	LOC_Os07g43060 LOC_Os10g40650 LOC_Os07g07310 LOC_Os07g10350 LOC_Os09g09480 LOC_Os06g10620 LOC_Os08g31240 LOC_Os12g34510 LOC_Os08g33100 LOC_Os07g36140 LOC_Os07g49220 More..

miRNA Regulations
miRNAs	osa-miR5809 osa-miR414

Database Links
Gramene	LOC_Os05g41510.1
Rice Genome Annotation	LOC_Os05g41510.1
Ricechip	LOC_Os05g41510.1
KEGG	osa:4339194 osa:9270554 dosa:Os05t0494900-01 dosa:Os05t0494800-01
Entrez-Gene	4339194