RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g41880.1 View Network Show in Genome Browser |
| Other Names | Os05g0498300 |
| Description | mutS domain V family protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 24522895-24532290 Nucleotide Length: 1590 |
| Protein-coding | LOC_Os05g41880 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g37920 LOC_Os01g67510 LOC_Os03g43850 LOC_Os01g72880 LOC_Os05g01310 LOC_Os01g71690 LOC_Os01g51280 LOC_Os02g29140 LOC_Os02g29160 LOC_Os04g57230 LOC_Os01g07640 More.. |
| Downstream Genes | LOC_Os06g21550 LOC_Os07g30240 LOC_Os11g19720 LOC_Os09g37930 LOC_Os12g04980 LOC_Os12g43590 LOC_Os12g31370 LOC_Os11g04954 LOC_Os12g40770 LOC_Os09g03750 LOC_Os09g03630 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g41880.1 |
| Rice Genome Annotation | LOC_Os05g41880.1 |
| Ricechip | LOC_Os05g41880.1 |
| KEGG | osa:4339215 dosa:Os05t0498300-01 |
| Entrez-Gene | 4339215 |