RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g42150.1 View Network Show in Genome Browser |
| Other Names | Os05g0500900 |
| Description | OsGH3.4 - Probable indole-3-acetic acid-amido synthetase, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 24643516-24646086 Nucleotide Length: 1890 |
| Protein-coding | LOC_Os05g42150 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0016049 | cell growth | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g41140 LOC_Os03g42464 LOC_Os05g35520 LOC_Os02g54590 |
| Downstream Genes | LOC_Os05g43970 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 |
| Reference | |
|---|---|
| PubMed | 15856348 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g42150.1 |
| Rice Genome Annotation | LOC_Os05g42150.1 |
| Ricechip | LOC_Os05g42150.1 |
| KEGG | osa:4339234 dosa:Os05t0500900-01 |
| Entrez-Gene | 4339234 |