RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g42250.1 View Network Show in Genome Browser |
| Other Names | Os05g0502000 |
| Description | cyclic nucleotide-gated ion channel 2, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 24711968-24716742 Nucleotide Length: 2076 |
| Protein-coding | LOC_Os05g42250 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008219 | cell death | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g54100 LOC_Os03g57450 LOC_Os03g57510 LOC_Os02g46090 LOC_Os04g49510 LOC_Os02g58520 LOC_Os03g03660 LOC_Os02g15580 LOC_Os05g41270 LOC_Os05g39090 LOC_Os04g55080 More.. |
| Downstream Genes | LOC_Os07g01810 LOC_Os11g07040 LOC_Os12g07230 LOC_Os12g30150 LOC_Os07g06740 LOC_Os10g39420 LOC_Os09g12790 LOC_Os12g28260 LOC_Os12g19290 LOC_Os12g12860 LOC_Os12g06570 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g42250.1 |
| Rice Genome Annotation | LOC_Os05g42250.1 |
| Ricechip | LOC_Os05g42250.1 |
| KEGG | osa:4339240 dosa:Os05t0502000-01 |
| Entrez-Gene | 4339240 |