RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g43374.1 View Network Show in Genome Browser |
| Other Names | Os05g0509300 |
| Description | pseudouridylate synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 25220531-25224493 Nucleotide Length: 558 |
| Protein-coding | LOC_Os05g43374 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os04g54840 LOC_Os01g72049 LOC_Os03g10460 LOC_Os03g24890 LOC_Os03g22570 LOC_Os04g41140 LOC_Os04g53700 LOC_Os01g11110 LOC_Os02g51810 LOC_Os01g62040 LOC_Os04g55860 More.. |
| Downstream Genes | LOC_Os10g31856 LOC_Os11g36390 LOC_Os08g40820 LOC_Os05g51790 LOC_Os11g08940 LOC_Os07g36450 LOC_Os09g19940 LOC_Os05g44390 LOC_Os09g28019 LOC_Os11g14990 LOC_Os07g40750 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g43374.1 |
| Rice Genome Annotation | LOC_Os05g43374.1 |
| Ricechip | LOC_Os05g43374.1 |
| KEGG | osa:9272465 dosa:Os05t0509300-01 |
| Entrez-Gene | 9272465 |