RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g43390.1 View Network Show in Genome Browser |
| Other Names | Os05g0509500 |
| Description | signal recognition particle 54 kDa protein, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 25229675-25233242 Nucleotide Length: 1452 |
| Protein-coding | LOC_Os05g43390 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g11030 LOC_Os01g66560 LOC_Os02g43600 LOC_Os02g32400 LOC_Os04g42010 LOC_Os02g51430 LOC_Os01g72800 LOC_Os02g39700 LOC_Os05g06350 LOC_Os02g04060 LOC_Os02g04050 More.. |
| Downstream Genes | LOC_Os08g40610 LOC_Os09g32274 LOC_Os06g23430 LOC_Os05g49130 LOC_Os09g36440 LOC_Os08g37444 LOC_Os12g44390 LOC_Os08g45010 LOC_Os09g14610 LOC_Os12g28177 LOC_Os12g28137 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g43390.1 |
| Rice Genome Annotation | LOC_Os05g43390.1 |
| Ricechip | LOC_Os05g43390.1 |
| KEGG | osa:4339274 dosa:Os05t0509500-01 |
| Entrez-Gene | 4339274 |