RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g43570.1 View Network Show in Genome Browser |
| Other Names | Os05g0511400 |
| Description | AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 25331783-25339777 Nucleotide Length: 1671 |
| Protein-coding | LOC_Os05g43570 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g44900 LOC_Os03g54780 LOC_Os04g47580 LOC_Os02g05630 LOC_Os03g17700 LOC_Os03g07600 LOC_Os05g11730 LOC_Os04g37904 LOC_Os02g55560 LOC_Os03g02680 LOC_Os03g45290 More.. |
| Downstream Genes | LOC_Os07g39630 LOC_Os10g23090 LOC_Os07g32380 LOC_Os06g06090 LOC_Os06g48300 LOC_Os06g33549 LOC_Os06g33530 LOC_Os06g35530 LOC_Os11g04170 LOC_Os12g03970 LOC_Os05g50810 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1436 osa-miR818a osa-miR818b osa-miR818c osa-miR818d osa-miR818e |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g43570.1 |
| Rice Genome Annotation | LOC_Os05g43570.1 |
| Ricechip | LOC_Os05g43570.1 |
| KEGG | osa:4339288 dosa:Os05t0511400-01 |
| Entrez-Gene | 4339288 |