RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g43830.2 View Network Show in Genome Browser |
| Other Names | Os05g0513900 |
| Description | hydrolase, alpha/beta fold family domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 25476707-25484371 Nucleotide Length: 996 |
| Protein-coding | LOC_Os05g43830 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g34630 LOC_Os03g51010 LOC_Os01g49380 LOC_Os05g19150 LOC_Os04g55180 LOC_Os03g27110 LOC_Os01g69060 LOC_Os01g44960 LOC_Os04g39150 LOC_Os02g50620 LOC_Os04g26910 More.. |
| Downstream Genes | LOC_Os09g34860 LOC_Os07g48610 LOC_Os07g42140 LOC_Os07g38830 LOC_Os07g37840 LOC_Os07g42994 LOC_Os07g41080 LOC_Os11g34940 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5145 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g43830.2 |
| Rice Genome Annotation | LOC_Os05g43830.2 |
| Ricechip | LOC_Os05g43830.2 |
| KEGG | osa:4339305 dosa:Os05t0513900-01 |
| Entrez-Gene | 4339305 |