RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g44210.1 View Network Show in Genome Browser |
| Other Names | Os05g0518600 |
| Description | trehalose-6-phosphate synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 25713720-25720299 Nucleotide Length: 2580 |
| Protein-coding | LOC_Os05g44210 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g44230 LOC_Os04g46760 LOC_Os02g51680 LOC_Os03g26910 LOC_Os02g03100 LOC_Os02g54820 LOC_Os05g44100 LOC_Os01g53000 LOC_Os04g51120 LOC_Os05g23620 LOC_Os01g54560 More.. |
| Downstream Genes | LOC_Os10g40550 LOC_Os07g30160 LOC_Os09g20390 LOC_Os08g31630 LOC_Os07g43160 LOC_Os06g11840 LOC_Os09g20990 LOC_Os08g34580 LOC_Os12g12860 LOC_Os07g44710 LOC_Os12g04440 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00500 rn01100 |
| Metacyc Pathways | TRESYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g44210.1 |
| Rice Genome Annotation | LOC_Os05g44210.1 |
| Ricechip | LOC_Os05g44210.1 |
| KEGG | osa:9266089 dosa:Os05t0518600-01 |
| Entrez-Gene | 9266089 |