RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g44590.4 View Network Show in Genome Browser |
| Other Names | Os05g0521500 |
| Description | ATP-dependent protease La, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 25942431-25947920 Nucleotide Length: 1470 |
| Protein-coding | LOC_Os05g44590 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g35630 LOC_Os02g19150 LOC_Os01g66330 LOC_Os04g44400 LOC_Os02g42290 LOC_Os01g16530 LOC_Os03g19510 LOC_Os03g29810 LOC_Os01g32350 LOC_Os03g22430 LOC_Os04g56800 More.. |
| Downstream Genes | LOC_Os05g45750 LOC_Os08g15270 LOC_Os12g10590 LOC_Os10g21300 LOC_Os10g43050 LOC_Os06g04530 LOC_Os06g20320 LOC_Os05g51450 LOC_Os07g48960 LOC_Os12g37690 LOC_Os09g36300 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2877 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g44590.4 |
| Rice Genome Annotation | LOC_Os05g44590.4 |
| Ricechip | LOC_Os05g44590.4 |
| KEGG | osa:4339355 dosa:Os05t0521500-01 |
| Entrez-Gene | 4339355 |