RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g45220.1 View Network Show in Genome Browser |
| Other Names | Os05g0528200 |
| Description | 50S ribosomal protein L20, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 26249567-26251352 Nucleotide Length: 366 |
| Protein-coding | LOC_Os05g45220 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g55120 LOC_Os02g01110 LOC_Os02g33500 LOC_Os01g56990 LOC_Os02g55134 LOC_Os03g63720 LOC_Os03g02030 |
| Downstream Genes | LOC_Os06g43900 LOC_Os10g26130 LOC_Os12g34860 LOC_Os10g42860 LOC_Os05g48510 LOC_Os08g19850 LOC_Os06g47840 LOC_Os11g06750 LOC_Os12g06610 LOC_Os12g25710 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR396a-5p osa-miR396b-5p osa-miR396c-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g45220.1 |
| Rice Genome Annotation | LOC_Os05g45220.1 |
| Ricechip | LOC_Os05g45220.1 |
| KEGG | osa:4339398 dosa:Os05t0528200-01 |
| Entrez-Gene | 4339398 |