RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g45820.1 View Network Show in Genome Browser |
| Other Names | Os05g0534500 |
| Description | heavy metal-associated domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 26538000-26541970 Nucleotide Length: 483 |
| Protein-coding | LOC_Os05g45820 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g42060 LOC_Os04g44354 LOC_Os03g60960 LOC_Os01g59110 LOC_Os01g53420 LOC_Os01g53380 LOC_Os01g53350 LOC_Os04g48410 LOC_Os01g53370 LOC_Os02g10290 LOC_Os05g42040 More.. |
| Downstream Genes | LOC_Os07g47350 LOC_Os10g18530 LOC_Os09g34230 LOC_Os08g38160 LOC_Os07g13800 LOC_Os06g18790 LOC_Os10g18480 LOC_Os10g18510 LOC_Os06g18670 LOC_Os08g38130 LOC_Os09g34250 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5788 osa-miR816 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g45820.1 |
| Rice Genome Annotation | LOC_Os05g45820.1 |
| Ricechip | LOC_Os05g45820.1 |
| KEGG | osa:4339433 dosa:Os05t0534500-01 |
| Entrez-Gene | 4339433 |