RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g45920.1 View Network Show in Genome Browser |
| Other Names | Os05g0535800 |
| Description | S1 RNA binding domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 26608284-26612433 Nucleotide Length: 1518 |
| Protein-coding | LOC_Os05g45920 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g06200 LOC_Os03g17730 LOC_Os04g33390 LOC_Os04g55780 LOC_Os02g47940 |
| Downstream Genes | LOC_Os06g04280 LOC_Os07g49390 LOC_Os10g37980 LOC_Os07g32774 LOC_Os06g05910 LOC_Os09g39260 LOC_Os09g39230 LOC_Os06g45930 LOC_Os06g05900 LOC_Os06g04150 |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g45920.1 |
| Rice Genome Annotation | LOC_Os05g45920.1 |
| Ricechip | LOC_Os05g45920.1 |
| KEGG | osa:4339443 dosa:Os05t0535800-00 |
| Entrez-Gene | 4339443 |