RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g46430.1 View Network Show in Genome Browser |
| Other Names | Os05g0541900 |
| Description | 60S ribosomal protein L28-1, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 26901983-26905011 Nucleotide Length: 444 |
| Protein-coding | LOC_Os05g46430 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005198 | structural molecule activity | Molecular Function | IEA | |
| GO:0005618 | cell wall | Cellular Component | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005840 | ribosome | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os05g28750 LOC_Os01g19840 LOC_Os03g58430 LOC_Os04g51630 LOC_Os03g05980 LOC_Os03g37970 LOC_Os02g06700 LOC_Os03g21940 LOC_Os05g40820 LOC_Os01g59990 LOC_Os03g58050 More.. |
| Downstream Genes | LOC_Os07g08660 LOC_Os08g13690 LOC_Os06g02510 LOC_Os11g38959 LOC_Os09g32532 LOC_Os09g32520 LOC_Os09g32500 LOC_Os07g07709 LOC_Os08g41300 LOC_Os07g05580 LOC_Os08g03640 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g46430.1 |
| Rice Genome Annotation | LOC_Os05g46430.1 |
| Ricechip | LOC_Os05g46430.1 |
| KEGG | osa:4339475 dosa:Os05t0541900-01 |
| Entrez-Gene | 4339475 |