RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g46560.2 View Network Show in Genome Browser |
| Other Names | Os05g0543200 |
| Description | RAN GTPase-activating protein 1, putative, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 26958517-26961504 Nucleotide Length: 1635 |
| Protein-coding | LOC_Os05g46560 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0030234 | enzyme regulator activity | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005635 | nuclear envelope | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g03130 LOC_Os03g15700 LOC_Os05g28290 LOC_Os05g38520 LOC_Os01g62350 LOC_Os05g28750 LOC_Os01g19840 LOC_Os02g12570 LOC_Os02g13640 LOC_Os01g68940 LOC_Os03g18180 More.. |
| Downstream Genes | LOC_Os10g39120 LOC_Os05g49890 LOC_Os08g33390 LOC_Os12g38380 LOC_Os11g16540 LOC_Os06g48310 LOC_Os06g21470 LOC_Os11g41890 LOC_Os09g07500 LOC_Os08g42560 LOC_Os06g13999 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g46560.2 |
| Rice Genome Annotation | LOC_Os05g46560.2 |
| Ricechip | LOC_Os05g46560.2 |
| KEGG | osa:4339487 dosa:Os05t0543200-01 |
| Entrez-Gene | 4339487 |