RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os05g47540.4 View Network Show in Genome Browser |
| Other Names | Os05g0548900 |
| Description | CPuORF26 - conserved peptide uORF-containing transcript, expressed |
| Gene Attributes | Chromosome: Chr5 CDS Coordinates (5'-3'): 27229401-27233702 Nucleotide Length: 1164 |
| Protein-coding | LOC_Os05g47540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os03g51600 LOC_Os03g17000 LOC_Os02g01010 LOC_Os03g56280 LOC_Os02g07720 LOC_Os02g41590 LOC_Os05g23620 LOC_Os05g04510 LOC_Os01g22010 LOC_Os02g38840 LOC_Os01g18860 More.. |
| Downstream Genes | LOC_Os11g26850 LOC_Os12g41250 LOC_Os12g43630 LOC_Os11g20790 LOC_Os12g13380 LOC_Os11g09280 LOC_Os11g14220 LOC_Os09g08910 LOC_Os12g08260 LOC_Os06g46372 LOC_Os09g07820 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os05g47540.4 |
| Rice Genome Annotation | LOC_Os05g47540.4 |
| Ricechip | LOC_Os05g47540.4 |
| KEGG | osa:4339516 dosa:Os05t0548900-01 |
| Entrez-Gene | 4339516 |